Polyglot R and Python Bioinformatics and Data Science Projects Using Jupyter Notebooks

Posted on Sun 02 June 2024 in how-to • Tagged with bioinformatics, data-science, jupyter, notebooks, tutorial, r, python, sysadmin

TLDR - Check out this github repo for a (still really wordy) example: polyglot_jupyter_example

If you're anything like me, and there are probably tens of you out there, you enjoy working in multiple programming languages for your bioinformatics/data science work. Perhaps you love the tidyverse R ecosystem for data manipulation …


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Managing Software on a Multiuser Linux System - An Update

Posted on Sat 20 April 2024 in how-to • Tagged with sysadmin

Back in 2019, the halcyon days of yore, near the end of my time in graduate school I wrote a well-intentioned article about software management for multi-user linux systems (here). This original article was written based on my experiences as the de-facto sysadmin of our lab's bioinformatics server. I am …


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Managing Software on a Multiuser Linux System

Posted on Tue 25 June 2019 in how-to • Tagged with sysadmin

When I started my Ph.D. I had a good amount of experience working in a Linux environment on my own computers. Mostly as a hobby. My advisor had bought a small server several years previous for a post-doc's project and I was offered this system to use for my …


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